Carnegie Mellon University

2019 Publications

Ruan X, Johnson GR, Bierschenk I, Nitschke R, Boerries M, Busch H, Murphy RF. Image-derived models of cell organization changes during differentiation and drug treatments. Mol Biol Cell. 2019 Nov 27:mbcE19020080. doi: 10.1091/mbc.E19-02-0080. PMID: 31774723

Klimas A, Gallagher B, Zhao Y. Basics of Expansion Microscopy. Curr Protoc Cytom. 2019 Dec;91(1):e67. doi: 10.1002/cpcy.67. PMID: 31763769

Gildor T, Cary GA, Lalzar M, Hinman VF, Ben-Tabou de-Leon S. Developmental transcriptomes of the sea star, Patiria miniata, illuminate how gene expression changes with evolutionary distance. Sci Rep. 2019 Nov 7;9(1):16201. doi: 10.1038/s41598-019-52577-9. PMID: 31700051

Corbit VL, Gittis AH, Ahmari SE. A Model of Restraint: Nucleus Accumbens Fast-Spiking Interneurons Inhibit Unwanted Actions. Biol Psychiatry. 2019 Dec 1;86(11):804-806. doi: 10.1016/j.biopsych.2019.09.014. PMID: 31668219

Klimas A, Bucur O, Njeri B, Zhao Y. Nanoscopic Imaging of Human Tissue Sections via Physical and Isotropic Expansion. J Vis Exp. 2019 Sep 25;(151). doi: 10.3791/60195. PMID: 31609342

Barth AL, Ray A. Progressive Circuit Changes during Learning and Disease. Neuron. 2019 Oct 9;104(1):37-46. doi: 10.1016/j.neuron.2019.09.032. Review. PMID: 31600514

Kuljis DA, Park E, Telmer CA, Lee J, Ackerman DS, Bruchez MP, Barth AL. Fluorescence-Based Quantitative Synapse Analysis for Cell Type-Specific Connectomics. eNeuro. 2019 Oct 31;6(5). pii: ENEURO.0193-19.2019. doi: 10.1523/ENEURO.0193-19.2019. Print 2019 Sep/Oct. PMID: 31548370

Lin Y, May GE, Kready H, Nazzaro L, Mao M, Spealman P, Creeger Y, McManus CJ. Impacts of uORF codon identity and position on translation regulation. Nucleic Acids Res. 2019 Aug 8. pii: gkz681. doi: 10.1093/nar/gkz681. PMID: 31392980

Bulgari D, Deitcher DL, Schmidt BF, Carpenter MA, Szent-Gyorgyi C, Bruchez MP, Levitan ES. Activity-evoked and spontaneous opening of synaptic fusion pores. Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):17039-17044. doi: 10.1073/pnas.1905322116. Epub 2019 Aug 5. PMID: 31383765

Yablonska S, Ganesan V, Ferrando LM, Kim J, Pyzel A, Baranova OV, Khattar NK, Larkin TM, Baranov SV, Chen N, Strohlein CE, Stevens DA, Wang X, Chang YF, Schurdak ME, Carlisle DL, Minden JS, Friedlander RM. Mutant huntingtin disrupts mitochondrial proteostasis by interacting with TIM23. Proc Natl Acad Sci U S A. 2019 Aug 13;116(33):16593-16602. doi: 10.1073/pnas.1904101116. Epub 2019 Jul 25. PMID: 31346086

Khor JM, Guerrero-Santoro J, Ettensohn CA. Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis. Development. 2019 Aug 19;146(16). pii: dev180653. doi: 10.1242/dev.180653. PMID: 31331943

Audette NJ, Bernhard SM, Ray A, Stewart LT, Barth AL. Rapid Plasticity of Higher-Order Thalamocortical Inputs during Sensory Learning. Neuron. 2019 Jul 17;103(2):277-291.e4. doi: 10.1016/j.neuron.2019.04.037. Epub 2019 May 28. PMID: 31151774

Mitchell A, Blader I, Bradford P, D'Orazio S, Duprex WP, Ellermeier CD, Fernandez-Sesma A, Imperiale MJ, McMahon K, Pasetti MF, Tringe S. mSphere of Influence: the View from the Microbiologists of the Future. mSphere. 2019 Jun 19;4(3). pii: e00348-19. doi: 10.1128/mSphere.00348-19. PMID: 31217304

Cuomo CA, Fanning S, Gujja S, Zeng Q, Naglik JR, Filler SG, Mitchell AP. Genome Sequence for Candida albicans Clinical Oral Isolate 529L. Microbiol Resour Announc. 2019 Jun 20;8(25). pii: e00554-19. doi: 10.1128/MRA.00554-19. PMID: 31221654

Huang MY, Woolford CA, May G, McManus CJ, Mitchell AP. Circuit diversification in a biofilm regulatory network. PLoS Pathog. 2019 May 22;15(5):e1007787. doi: 10.1371/journal.ppat.1007787. eCollection 2019 May. PMID: 31116789

Witchley JN, Penumetcha P, Abon NV, Woolford CA, Mitchell AP, Noble SM. Candida albicans Morphogenesis Programs Control the Balance between Gut Commensalism and Invasive Infection. Cell Host Microbe. 2019 Mar 13;25(3):432-443.e6. doi: 10.1016/j.chom.2019.02.008. PMID: 30870623

Kaupbayeva B, Murata H, Lucas A, Matyjaszewski K, Minden JS, Russell AJ. Molecular Sieving on the Surface of a Nano-Armored Protein. Biomacromolecules. 2019 Feb 4. doi: 10.1021/acs.biomac.8b01651. PMID: 30650307

Corbit VL, Manning EE, Gittis AH, Ahmari SE. Strengthened inputs from secondary motor cortex to striatum in a mouse model of compulsive behavior. J Neurosci. 2019 Feb 8. pii: 1728-18. doi: 10.1523/JNEUROSCI.1728-18.2018. PMID: 30737313

Shorr AZ, Sönmez UM, Minden JS, LeDuc PR. High-throughput mechanotransduction in Drosophila embryos with mesofluidics. Lab Chip. 2019 Feb 19. doi: 10.1039/c8lc01055b. PMID: 30778467

Cary GA, Wolff A, Zueva O, Pattinato J, Hinman VF. Analysis of sea star larval regeneration reveals conserved processes of whole-body regeneration across the metazoa. BMC Biol. 2019 Feb 22;17(1):16. doi: 10.1186/s12915-019-0633-9. PMID: 30795750

Klinge S, Woolford JL Jr. Ribosome assembly coming into focus. Nat Rev Mol Cell Biol. 2019 Feb;20(2):116-131. doi: 10.1038/s41580-018-0078-y. Review. PMID: 30467428

Wassie AT, Zhao Y, Boyden ES. Expansion microscopy: principles and uses in biological research. Nat Methods. 2019 Jan;16(1):33-41. doi: 10.1038/s41592-018-0219-4. Epub 2018 Dec 20. Review. PMID: 30573813