Carnegie Mellon University

2018 Publications

Ruan X, Murphy RF. Evaluation of methods for generative modeling of cell and nuclear shape. Bioinformatics. 2018 Dec 7. doi: 10.1093/bioinformatics/bty983. PMID: 30535313

Bucur O, Zhao Y. Nanoscale Imaging of Kidney Glomeruli Using Expansion Pathology. Front Med (Lausanne). 2018 Nov 21;5:322. doi: 10.3389/fmed.2018.00322. eCollection 2018. PMID: 30519560

Shelke SA, Shao Y, Laski A, Koirala D, Weissman BP, Fuller JR, Tan X, Constantin TP, Waggoner AS, Bruchez MP, Armitage BA, Piccirilli JA. Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif. Nat Commun. 2018 Oct 31;9(1):4542. doi: 10.1038/s41467-018-06942-3. PMID: 30382099

Whalen TC, Gittis AH. Histamine and deep brain stimulation: the pharmacology of regularizing a brain. J Clin Invest. 2018 Dec 3;128(12):5201-5202. doi: 10.1172/JCI124777. Epub 2018 Oct 29. PMID: 30371507

Jeon BB, Swain AD, Good JT, Chase SM, Kuhlman SJ. Feature selectivity is stable in primary visual cortex across a range of spatial frequencies. Sci Rep. 2018 Oct 16;8(1):15288. doi: 10.1038/s41598-018-33633-2. PMID: 30327571

Aggarwal SD, Eutsey R, West-Roberts J, Domenech A, Xu W, Abdullah IT, Mitchell AP, Veening JW, Yesilkaya H, Hiller NL. Function of BriC peptide in the pneumococcal competence and virulence portfolio. PLoS Pathog. 2018 Oct 11;14(10):e1007328. doi: 10.1371/journal.ppat 1007328. eCollection 2018 Oct. PMID: 30308062

Zarnowski R, Sanchez H, Covelli AS, Dominguez E, Jaromin A, Berhardt J, Heiss C, Azadi P, Mitchell A, Andes DR. Candida albicans biofilm-induced vesicles confer drug resistance through matrix biogenesis. PLoS Biol. 2018 Oct 8;16(10):e2006872. doi: 10.1371/journal.pbio.2006872. PMID: 30296253

Shashikant T, Khor JM, Ettensohn CA. From Genome to Anatomy: The Architecture and Evolution of the Skeletogenic Gene Regulatory Network of Sea Urchins and Other Echinoderms. Genesis. 2018 Sep 27. doi: 10.1002/dvg.23253. Review. PMID: 30264451

Winsor J, Machi U, Han Q, Hackney DD, Lee TH. GTP hydrolysis promotes disassembly of the atlastin crossover dimer during ER fusion. J Cell Biol. 2018 Sep 24. pii: jcb.201805039. doi: 10.1083/jcb.201805039. [Epub ahead of print] PMID: 30249723

Davidson P, Eutsey R, Redler B, Hiller NL, Laub MT, Durand D. Flexibility and constraint: Evolutionary remodeling of the sporulation initiation pathway in Firmicutes. PLoS Genet. 2018 Sep 13;14(9):e1007470. doi: 10.1371/journal.pgen.1007470. eCollection 2018 Sep. PMID: 30212463

Han L, Murphy RF, Ramanan D. Learning Generative Models of Tissue Organization with Supervised GANs. IEEE Winter Conf Appl Comput Vis. 2018 Mar;2018:682-690. doi: 10.1109/WACV.2018.00080. Epub 2018 May 7. PMID: 30177974

Tan X, Bruchez MP, Armitage BA. Closing the Loop: Constraining TAT Peptide by γPNA Hairpin for Enhanced Cellular Delivery of Biomolecules. Bioconjug Chem. 2018 Sep 19;29(9):2892-2898. doi: 10.1021/acs.bioconjchem.8b00495. Epub 2018 Aug 22. PMID: 30130094

Biedka S, Micic J, Wilson D, Brown H, Diorio-Toth L, Woolford JL Jr. Hierarchical recruitment of ribosomal proteins and assembly factors remodels nucleolar pre-60S ribosomes. J Cell Biol. 2018 Jul 2;217(7):2503-2518. doi: 10.1083/jcb.201711037. Epub 2018 Apr 24. PMID: 29691304

Liu H, Xu W, Solis NV, Woolford C, Mitchell AP, Filler SG. Functional convergence of gliP and aspf1 in Aspergillus fumigatus pathogenicity. Virulence. 2018;9(1):1062-1073. doi: 10.1080/21505594.2018.1482182. PMID: 30052103

Lagree K, Mon HH, Mitchell AP, Ducker WA. Impact of surface topography on biofilm formation by Candida albicans. PLoS One. 2018 Jun 18;13(6):e0197925. doi: 10.1371/journal.pone.0197925. eCollection 2018. PMID: 29912894

Huang MY, Woolford CA, Mitchell AP. Rapid Gene Concatenation for Genetic Rescue of Multigene Mutants in Candida albicans. mSphere. 2018 Apr 25;3(2). pii: e00169-18. doi: 10.1128/mSphere.00169-18. Print 2018 Apr 25. PMID: 29695626

Yttri EA, Dudman JT. A proposed circuit computation in basal ganglia: History-dependent gain. Mov Disord. 2018 Mar 24. doi: 10.1002/mds.27321. [Epub ahead of print] PMID: 29575303

Dominguez E, Zarnowski R, Sanchez H, Covelli AS, Westler WM, Azadi P, Nett J, Mitchell AP, Andes DR. Conservation and Divergence in the Candida Species Biofilm Matrix Mannan-Glucan Complex Structure, Function, and Genetic Control. MBio. 2018 Apr 3;9(2). pii: e00451-18. doi: 10.1128/mBio.00451-18. PMID: 29615504

Beukema P, Cecil KL, Peterson E, Mann VR, Matsushita M, Takashima Y, Navlakha S, Barth AL. TrpM8-mediated somatosensation in mouse neocortex. J Comp Neurol. 2018 Feb 26. doi: 10.1002/cne.24418. PMID: 29484652

Hinman VF, Burke RD. Embryonic neurogenesis in echinoderms. Wiley Interdiscip Rev Dev Biol. 2018 Feb 22. doi: 10.1002/wdev.316. PMID: 29470839

Xu M, Lawrence JG, Durand D. Selection, periodicity and potential function for Highly Iterative Palindrome-1 (HIP1) in cyanobacterial genomes. Nucleic Acids Res. 2018 Feb 8. doi: 10.1093/nar/gky075. PMID: 29432573

Urban-Ciecko J, Jouhanneau JS, Myal SE, Poulet JFA, Barth AL. Precisely Timed Nicotinic Activation Drives SST Inhibition in Neocortical Circuits.Neuron. 2018 Feb 7;97(3):611-625.e5. doi: 10.1016/j.neuron.2018.01.037. PMID: 29420933

Lawless MJ, Pettersson JR, Rule GS, Lanni F, Saxena S. ESR Resolves the C Terminus Structure of the Ligand-free Human Glutathione S-Transferase A1-1. Biophys J. 2018 Feb 6;114(3):592-601. doi: 10.1016/j.bpj.2017.12.016. PMID: 29414705

Lagree K, Desai JV, Finkel JS, Lanni F. Microscopy of fungal biofilms. Curr Opin Microbiol. 2018 Jan 31;43:100-107. doi: 10.1016/j.mib.2017.12.008. PMID: 29414442

Lin Y, Schmidt BF, Bruchez MP, McManus CJ. Structural analyses of NEAT1 lncRNAs suggest long-range RNA interactions that may contribute to paraspeckle architecture. Nucleic Acids Res. 2018 Jan 31. doi: 10.1093/nar/gky046. PMID: 29394378

Bruchez MP. DNA nanostructures: Through, rather than across. Nat Mater. 2018 Jan 23;17(2):112-113. doi: 10.1038/nmat5073. PMID: 29358770