Carnegie Mellon University

2017 Publications

Tan X, Constantin TP, Sloane KL, Waggoner AS, Bruchez MP, Armitage BA. Fluoromodules Consisting of a Promiscuous RNA Aptamer and Red or Blue Fluorogenic Cyanine Dyes: Selection, Characterization, and Bioimaging. J Am Chem Soc. 2017 Jul 5;139(26):9001-9009. doi: 10.1021/jacs.7b04211. Epub 2017 Jun 23. PMID: 28644615

Lee J, Barth AL. Constructing the External World. Neuron. 2017 Jun 21;94(6):1048-1050. doi: 10.1016/j.neuron.2017.06.006. PMID: 28641104

Gallo E, Jarvik JW. Breaking the color barrier: a multi-selective antibody reporter offers innovative strategies of fluorescence detection. J Cell Sci. 2017 Jun 14. pii: jcs.202952. doi: 10.1242/jcs.202952. [Epub ahead of print] PMID: 28615413

Cary GA, Cheatle Jarvela AM, Francolini RD, Hinman VF. Genome-wide use of high- and low-affinity Tbrain transcription factor binding sites during echinoderm development. Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5854-5861. doi: 10.1073/pnas.1610611114. PMID: 28584099

Thompson JR, Erkenbrack EM, Hinman VF, McCauley BS, Petsios E, Bottjer DJ. Paleogenomics of echinoids reveals an ancient origin for the double-negative specification of micromeres in sea urchins. Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5870-5877. doi: 10.1073/pnas.1610603114. PMID: 28584090

Shiwarski DJ, Darr M, Telmer CA, Bruchez MP, Puthenveedu MA. PI3K Class II α regulates δ-Opioid Receptor Export from the trans-Golgi Network. Mol Biol Cell. 2017 May 31. pii: mbc.E17-01-0030. doi: 10.1091/mbc.E17-01-0030. PMID: 28566554

Cuevas RA, Eutsey R, Kadam A, West-Roberts JA, Woolford CA, Mitchell AP, Mason KM, Hiller NL. A novel streptococcal cell-cell communication peptide promotes pneumococcal virulence and biofilm formation. Mol Microbiol. 2017 May 29. doi: 10.1111/mmi.13721. PMID: 28557053

Kadam A, Eutsey RA, Rosch J, Miao X, Longwell M, Xu W, Woolford CA, Hillman T, Motib AS, Yesilkaya H, Mitchell AP, Hiller NL. Promiscuous signaling by a regulatory system unique to the pandemic PMEN1 pneumococcal lineage. PLoS Pathog. 2017 May 18;13(5):e1006339. doi: 10.1371/journal.ppat.1006339. eCollection 2017 May. PMID: 28542565

Mastro KJ, Zitelli KT, Willard AM, Leblanc KH, Kravitz AV, Gittis AH. Cell-specific pallidal intervention induces long-lasting motor recovery in dopamine-depleted mice. Nat Neurosci. 2017 May 8. doi: 10.1038/nn.4559. [Epub ahead of print] PMID: 28481350

Ackerman DS, Vasilev KV, Schmidt BF, Cohen LB, Jarvik JW. Tethered Fluorogen Assay to Visualize Membrane Apposition in Living Cells. Bioconjug Chem. 2017 May 17;28(5):1356-1362. doi: 10.1021/acs.bioconjchem.7b00047. Epub 2017 Apr 26. PMID: 28414915

Lagree K, Mitchell AP. Fungal Biofilms: Inside Out. Microbiol Spectr. 2017 Apr;5(2). doi: 10.1128/microbiolspec.FUNK-0024-2016. PMID: 28387175

Song L, Linstedt AD. Inhibitor of ppGalNAc-T3-mediated O-glycosylation blocks cancer cell invasiveness and lowers FGF23 levels. Elife. 2017 Mar 31;6. pii: e24051. doi: 10.7554/eLife.24051. PMID: 28362263

Mitchell AP. Location, location, location: Use of CRISPR-Cas9 for genome editing in human pathogenic fungi. PLoS Pathog. 2017 Mar 30;13(3):e1006209. doi: 10.1371/journal.ppat.1006209. eCollection 2017 Mar. PMID: 28358867

Winsor J, Hackney DD, Lee TH. The crossover conformational shift of the GTPase atlastin provides the energy driving ER fusion. J Cell Biol. 2017 May 1;216(5):1321-1335. doi: 10.1083/jcb.201609071. Epub 2017 Mar 29. PMID: 28356327

Audette NJ, Urban-Ciecko J, Matsushita M, Barth AL. POm Thalamocortical Input Drives Layer-Specific Microcircuits in Somatosensory Cortex. Cereb Cortex. 2017 Mar 10:1-17. doi: 10.1093/cercor/bhx044. [Epub ahead of print] PMID: 28334225

Huang MY, Mitchell AP. Marker Recycling in Candida albicans through CRISPR-Cas9-Induced Marker Excision. mSphere. 2017 Mar 15;2(2). pii: e00050-17. doi: 10.1128/mSphere.00050-17. eCollection 2017 Mar-Apr. PMID: 28317025

Snyder JC, Rochelle LK, Ray C, Pack TF, Bock CB, Lubkov V, Lyerly HK, Waggoner AS, Barak LS, Caron MG. Inhibiting clathrin-mediated endocytosis of the leucine-rich G protein-coupled receptor-5 diminishes cell fitness. J Biol Chem. 2017 Apr 28;292(17):7208-7222. doi: 10.1074/jbc.M116.756635. Epub 2017 Mar 8. PMID: 28275053

Shiwarski DJ, Tipton A, Giraldo MD, Schmidt BF, Gold MS, Pradhan AA, Puthenveedu MA. A PTEN-Regulated Checkpoint Controls Surface Delivery of δ Opioid Receptors. J Neurosci. 2017 Apr 5;37(14):3741-3752. doi: 10.1523/JNEUROSCI.2923-16.2017. Epub 2017 Mar 6. PMID: 28264976

Ambler R, Ruan X, Murphy RF, Wülfing C. Systems Imaging of the Immune Synapse. Methods Mol Biol. 2017;1584:409-421. doi: 10.1007/978-1-4939-6881-7_25. PMID: 28255716

Johnson GR, Kangas JD, Dovzhenko A, Trojok R, Voigt K, Majarian TD, Palme K, Murphy RF. A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts. Cytometry A. 2017 Apr;91(4):326-335. doi: 10.1002/cyto.a.23067. Epub 2017 Feb 28. PMID: 28245335

Cary GA, Hinman VF. Echinoderm development and evolution in the post-genomic era. Dev Biol. 2017 Feb 7. pii: S0012-1606(16)30574-7. doi: 10.1016/j.ydbio.2017.02.003. [Epub ahead of print] Review. PMID: 28185788

Weinberg ZY, Zajac AS, Phan T, Shiwarski DJ, Puthenveedu MA. Sequence-Specific Regulation of Endocytic Lifetimes Modulates Arrestin-Mediated Signaling at the µ Opioid Receptor. Mol Pharmacol. 2017 Apr;91(4):416-427. doi: 10.1124/mol.116.106633. Epub 2017 Feb 2. PMID: 28153854

Wang Y, Ballou B, Schmidt BF, Andreko S, St Croix CM, Watkins SC, Bruchez MP. Affibody-targeted fluorogen activating protein for in vivo tumor imaging. Chem Commun (Camb). 2017 Feb 7;53(12):2001-2004. doi: 10.1039/c6cc09137g. PMID: 28120951

Darby CA, Stolzer M, Ropp PJ, Barker D, Durand D. Xenolog classification. Bioinformatics. 2017 Mar 1;33(5):640-649. doi: 10.1093/bioinformatics/btw686.PMID: 27998934

Lal J, Maccarini M, Fouquet P, Ho NT, Ho C, Makowski L. Modulation of hemoglobin dynamics by an allosteric effector. Protein Sci. 2017 Mar;26(3):505-514. doi: 10.1002/pro.3099. Epub 2017 Feb 14. PMID: 27977887