
Publications
All Publications
2023
- Jingyi Wu, Shaojie Bai, Jana M Kainerstorfer, " Deep learning-based near-infrared spectroscopy time-series analysis with long short-term memory", Optical Tomography and Spectroscopy of Tissue XV, PC123760B (2023)
- Jason Yang, D Acharya, WB Scammon, S Schmitt, E Crane, MA Smith, JM Kainerstorfer, " Cerebrovascular Impedance as a Function of Cerebral Perfusion Pressure", IEEE Open Journal of Engineering in Medicine and Biology (12 January 2023)
- Jason Yang, Alexander Ruesch,
Jana M Kainerstorfer , " Cerebrovascular Impedance Estimation with Near-Infrared and Diffuse Correlation Spectroscopy", Neurophotonics 10 (1), 015002 (2023)
2022
- Syeda Tabassum, Alexander Ruesch, Deepshikha Acharya, Jason Yang, Filip AJ Relander, Bradley Scammon, Michael S Wolf, Jaskaran Rakkar, Robert SB Clark, Michael M McDowell, Jana M Kainerstorfer, " Clinical Translations of Noninvasive Intracranial Pressure Sensing with Diffuse Correlation Spectroscopy", Journal of Neurosurgery 1 (aop), 1-10 (2022)
- Joshua W Tashman, Daniel J Shiwarski, Brian Coffin, Alexander Ruesch, Frederick Lanni, Jana M Kainerstorfer, Adam W Feinberg, " Insitu Volumetric Imaging and Analysis of FRESH 3D Bioprinted Constructs Using Optical Coherence Tomography", Biofabrication 15 (1), 014102 (2022)
- Filip AJ Relander, Alexander Ruesch, Jason Yang, Deepshikha Acharya, Bradley Scammon, Samantha Schmitt, Emily C Crane, Matthew A Smith, Jana M Kainerstorfer, " Using Near-Infrared Spectroscopy and Random Forest Regressor to Estimate Intracranial Pressure", Neurophotonics 9 (4), 045001 (2022)
- Jingyi Wu, Syeda Tabassum, William L Brown, Sossena Wood, Jason Yang, Jana M Kainerstorfer, " Two-layer Analytical Model for Estimation of Layer Thickness and Flow Using Diffuse Correlation Spectroscopy,", Plos one 17 (9), e0274258 (2022)
- Deepshikha Acharya, Ankita Mukherjea, Jiaming Cao, Alexander Ruesch, Samantha Schmitt, Jason Yang, Matthew A Smith, Jana M Kainerstorfer, " Non-Invasive Spectroscopy for Measuring Cerebral Tissue Oxygenation and Metabolism as a Function of Cerebral Perfusion Pressure", Metabolites 12 (7), 667 (2022)
- Deepshikha Acharya, Alexander Ruesch, Samantha Schmitt, Jason Yang, Matthew A Smith, Jana M Kainerstorfer, " Changes in Neurovascular Coupling with Cerebral Perfusion Pressure Indicate a Link to Cerebral Autoregulation", Journal of Cerebral Blood Flow & Metabolism 42 (7), 1247-1258 (2022)
- D Acharya, S Schmitt, J Yang, A Ruesch, W Scammon, E Crane, M Smith, J Kainerstorfer, " Evaluating Changes in Neurovascular Coupling as a Result of Cerebral Autoregulation", JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM 42 (1_ SUPPL), 8-9 (2022)
- Jacqueline E Gunther, Baptiste Jayet, Sanathana Konugolu Venkata Sekar, Jana M Kainerstorfer, Stefan Andersson‐Engels, " Review of optical methods for fetal monitoring in utero", Journal of Biophotonics 15 (6), e202100343 (2022)
- Deepshikha Acharya, Ankita Mukherjea, Alexander Ruesch, Jason Yang, Samantha Schmitt, William B Scammon, Emily Crane, Matthew A Smith, Jana M Kainerstorfer, " Changes in Cerebral Metabolic Rate of Oxygen with Cerebral Perfussion Pressure", Optical Tomography and Spectroscopy, OS2D. 4 (2022)
- Jiaming Cao, Pulkit Grover, Jana M Kainerstorfer, " Improving Electroencephalography Source reconstruction Accuracy Using Spatial Priors Derived from Diffuse Optical Tomography", Optical Tomography and Spectroscopy, OW3D. 2 (2022)
- Jingyi Wu, Alexander Ruesch, Eva-Maria S Bønnelycke, J Chris McKnight, Neil Ray, Gerardo Bosco, Matteo Paganini, Tommaso Antonio Giacon, Jana M Kainerstorfer, " Self-Calibrated Pulse Oximentry Development Applies to Data from Human Freedivers", Optical Tomography and Spectroscopy, OW3D. 6 (2022)
- Filip AJ Relander, Alexander Ruesch, Jason Yang, Deepshikha Acharya, Bradley Scammon, Samantha Schmitt, Emily Crane, Matthew A Smith, Jana M Kainerstorfer, " Estimation of Intracranial Pressure Using Cardiac Pulse Waveform Features with Near Infrared Spectroscopy", Optics and the Brain, BS3C. 2 (2022)
- Jason Yang, Deepshikha Acharya, William B Scammon, Samantha Schmitt, Emily Crane, Matthew A Smith, Jana M Kainerstorfer, " Optical Methods for Non-Invasive Cerebral Assessment of Arteriole Flow Impedance", Optical Tomography and Spectroscopy, OS2D. 3 (2022)
- William B Scammon, Jason Yang, Jana M Kainerstorfer, " Frequency Division Multiplexed (FDM) NIRS for Wearable Applications", Optical Tomography and Spectroscopy, OTu2D. 5 (2022)
- Alexander Ruesch, Deepshikha Acharya, Eli Bulger, J Chris McKnight, Andreas Fahlman, Barbara G Shinn-Cunningham, Jana M Kainerstorfer, " Light Propagation Through Dolphin Blubber: Towards Marine Mammal NIRS", Optical Tomography and Spectroscopy, JM3A. 15 (2022)
- Jason Yang, Deepshikha Acharya, Bradley Scammon, Samantha Schmitt, Matthew A Smith, Jana M Kainerstorfer, " Optical methods for non-invasive assessment of cerebral microvascular flow impedance", Clinical and Translational Neurophotonics 2022, PC1194501 (2022)
- Syeda M Tabassum, Alexander Ruesch, Deepshikha Acharya, Jason Yang, Jaskaran Rakkar, Robert SB Clark, Michael M McDowell, Jana M Kainerstorfer, " Clinical translation of intracranial pressure sensing with diffuse correlation spectroscopy", Clinical and Translational Neurophotonics 2022, PC119450A (2022)
- Jiaming Cao, Pulkit Grover,
Jana M Kainerstorfer , " Optimized optode placement strategy for diffuse optical tomography", Clinical and Translational Neurophotonics 2022 11945, 19-23 (2022)
- Jingyi Wu, Jacqueline Gunther, Baptiste Jayet, Neil Ray, Stefan Andersson-Engels, Jana M Kainerstorfer, " Photon pathlength based self-calibrated pulse oximetry", Dynamics and Fluctuations in Biomedical Photonics XIX, PC119590G (2022)
- Ricardo C Nogueira, Marcel Aries, Jatinder S Minhas, Nils H Petersen, Li Xiong, Jana M Kainerstorfer, Pedro Castro, " Review of studies on dynamic cerebral autoregulation in the acute phase of stroke and the relationship with clinical outcome", Journal of Cerebral Blood Flow & Metabolism 42 (3), 430-453 (2022)
- Jana Kainerstorfer, " Changes in neurovascular coupling with cerebral perfusion pressure indicate a link to cerebral autoregulation", figshare (2022)
- Alexander Ruesch, J Chris McKnight, Andreas Fahlman, Barbara G Shinn-Cunningham, Jana M Kainerstorfer, " Near-Infrared Spectroscopy as a Tool for Marine Mammal Research and Care", Frontiers in Physiology 12, 2546 (2022)
- Alexander Ruesch, Jason Yang, Samantha Schmitt, Deepshikha Acharya, Matthew A Smith, Jana M Kainerstorfer, " Erratum: Estimating intracranial pressure using pulsatile cerebral blood flow measured with diffuse correlation spectroscopy: erratum., Biomedical Optics Express 13 (2), 710-712 (2022)
- Victor XD Yang, Jana M Kainerstorfer, " Clinical and Translational Neurophotonics 2022", Proc. of SPIE Vol 11945, 1194501-1 (2022)

2021
- Eva-Maria S Bønnelycke, Gordon D Hastie, Kimberley A Bennett, Jana M Kainerstorfer, Ryan Milne, Simon EW Moss, Alexander Ruesch, Jingyi Wu, J Chris McKnight, " Wearable Near-Infrared Spectroscopy as a Physiological Monitoring Tool for Seals under Anaesthesia", Remote Sensing 13 (18), 3553 (2021)
- Jacqueline Gunther, Baptiste Jayet, Adam Jacobs, Ray Burke, Jana M Kainerstorfer, Stefan Andersson‐Engels, " Effect of the presence of amniotic fluid for optical transabdominal fetal monitoring using Monte Carlo simulations", Journal of Biophotonics 14 (9), e202000486 (2021)
- J Chris McKnight, Eric Mulder, Alexander Ruesch, Jana M Kainerstorfer, Jingyi Wu, Naser Hakimi, Steve Balfour, Mathijs Bronkhorst, Jörn M Horschig, Frank Pernett, Katsufumi Sato, Gordon D Hastie, Peter Tyack, Erika Schagatay, " When the human brain goes diving: using near-infrared spectroscopy to measure cerebral and systemic cardiovascular responses to deep, breath-hold diving in elite Freedivers", Philosophical Transactions of the Royal Society B 376 (1831), 20200349 (2021)
- J Chris McKnight, Alexander Ruesch, Kimberley Bennett, Mathijs Bronkhorst, Steve Balfour, Simon EW Moss, Ryan Milne, Peter L Tyack, Jana M Kainerstorfer, Gordon D Hastie, " Shining new light on sensory brain activation and physiological measurement in seals using wearable optical technology", Philosophical Transactions of the Royal Society B 376 (1830), 20200224 (2021)
- Alexander Ruesch, J Chris McKnight, Gordon D Hastie, Barbara G Shinn-Cunningham, Jana M Kainerstorfer, " Functional near-infrared spectroscopy in non-domesticated grey seals", European Conference on Biomedical Optics, ETu4C. 7 (2021)
- Syeda Tabassum, Alexander Ruesch, Deepshikha Acharya, Jaskaran Rakkar, Robert SB Clark, Michael M McDowell, Jana M Kainerstorfer, " Intracranial pressure driven cardiac pulsation waveform changes measured with diffuse correlation spectroscopy", European Conference on Biomedical Optics, ETu3C. 4 (2021)
- Jingyi Wu, Jacqueline Gunther, Baptiste Jayet, Neil Ray, Stefan Andersson-Engels, Jana M Kainerstorfer. " Self-calibrated pulse oximetry based on absorption changes in photon pathlength", European Conference on Biomedical Optics, EM3C. 3 (2021)
- Alexander Ruesch, J Chris McKnight, Eric Mulder, Jingyi Wu, Steve Balfour, Barbara G Shinn-Cunningham, Erika Schagatay, Jana M Kainerstorfer, " Application of Near-infrared Spectroscopy in Human Elite Freedivers while Deepdiving on a Single Breath Hold", European Conference on Biomedical Optics, ETu4C. 6 (2021)
- Constance M Robbins, Syeda Tabassum, Molly F Baumhauer, Jason Yang, James F Antaki, Jana M Kainerstorfer, " Two-layer spatial frequency domain imaging of compression-induced hemodynamic changes in breast tissue", Journal of Biomedical Optics 26 (5), 056005-056005 (2021)
- Alexander Ruesch, Deepshikha Acharya, Samantha Schmitt, Jason Yang, Matthew A Smith, Jana M Kainerstorfer, " Comparison of static and dynamic cerebral autoregulation under anesthesia influence in a controlled animal model", Plos one 16 (1), e0245291 (2021)
- VXD Yang, QM Luo, SK Mohanty, J Ding, AW Roe, JM Kainerstorfer, L Fu, S Shoham, " Optical Techniques in Neurosurgery, Neurophotonics, and Optogenetics", Proc. of SPIE Vol 11629, 1162901-1 (2021)
- J Chris McKnight, Eric Mulder, Alexander Ruesch, Jana Kainerstorfer, Jingyi Wu, Naser Hakimi, Steve Balfour, Mathijs Bronkhorst, Jörn M Horschig, Frank Pernett, Katsufumi Sato, Gordon D Hastie, Peter L Tyack, Erika Schagatay, " When the Human Brain Goes Diving: Using NIRS to Measure Cerebral and Systemic Cardiovascular Responses to Deep, Breath-Hold Diving in Elite Freedivers", figshare (2021)
- Jiaming Cao, Theodore J Huppert, Pulkit Grover, Jana M Kainerstorfer, " Enhanced spatiotemporal resolution imaging of neuronal activity using joint electroencephalography and diffuse optical tomography", Neurophotonics 8 (1), 015002-015002 (2021)

2020
- Sossena Wood, Abeselom Fanta, Atinuke Dosunmu-Ogunbi, Alexander Ruesch, Jude Jonassaint, Theodore Huppert, Enrico M Novelli, Jana Kainerstorfer, " Assessing Dynamic Cerebral Autoregulation in Patients with Sickle Cell Disease Using Near-Infrared Spectroscopy and Paced Breathing", Blood 136, 57-58 (2020)
- Alexander Ruesch, Samantha Schmitt, Jason Yang, Matthew A Smith, Jana M Kainerstorfer, " Fluctuations in intracranial pressure can be estimated non-invasively using near-infrared spectroscopy in non-human primates", Journal of Cerebral Blood Flow & Metabolism 40 (11), 2304-2314 (2020)
- Alexander Ruesch, Jason Yang, Deepshikha Acharya, Samantha Schmitt, Matthew A Smith, Jana M Kainerstorfer, " Comparison of Dynamic and Static Assessment of Cerebral Autoregulation in Non-Human Primates", Optical Tomography and Spectroscopy, STu2D. 3 (2020)
- Jason Yang, Alexander Ruesch, Jana M Kainerstorfer, " Optical Methods for Non-Invasive Assessment of Arteriole Flow Impedance", Optical Tomography and Spectroscopy, SW2D. 5 (2020)
- Sossena Wood, Abeselom Fanta, Atinuke Dosunmu-Ogunbi, Alexander Ruesch, Jude Jonassaint, Theodore Huppert, Enrico M Novelli, Jana M Kainerstorfer, " Quantifying Cerebral Autoregulation in Patients with Sickle Cell Disease Using Near-Infrared Spectroscopy", Optics and the Brain, JTu3A. 5 (2020)
- Constance M Robbins, Jason Yang, James F Antaki, Jana M Kainerstorfer, " Application of a Two-Layer Model to Correct for Skin Pigmentation in Spatial Frequency Domain Imaging of the Healthy Breast", Optical Coherence Tomography, JW3A. 5 (2020)
- Jiaming Cao, Theodore Huppert, Pulkit Grover, Jana M Kainerstorfer, " Joint Spatio-temporal Neural Source Reconstruction Using Electroencephalography and Near-infrared Spectroscopy", Clinical and Translational Biophotonics, JW3A. 4 (2020)
- Jason Yang, Alexander Ruesch, Jana Kainerstorfer, " Optical methods for non-invasive assessment of arteriole flow impedance (Conference Presentation)", Neural Imaging and Sensing 2020 11226, 1122610 (2020)
- Alexander Ruesch, Samantha Schmitt, Jason Yang, Deepshikha Acharya, Jaskaran Rakkar, Michael S Wolf, Michael M Mcdowell, Elizabeth C Tyler-Kabara, Robert SB Clark, Matthew A Smith, Jana M Kainerstorfer, " Intracranial pressure estimated non-invasively in non-human primates and pediatric critical care (Conference Presentation)", Neural Imaging and Sensing 2020 11226, 112261J (2020)
- Deepshikha Acharya, Alexander Ruesch, Jason Yang, Samantha Schmitt, Jana Kainerstorfer, Matthew Smith, " Role of cerebrovascular autoregulation in neurovascular coupling (Conference Presentation)", Neural Imaging and Sensing 2020 11226, 112260Y (2020)
- Jana M Kainerstorfer, " Non-invasive intracranial pressure monitoring and neurovascular coupling assessment in the context of brain injury (Conference Presentation)", Multiscale Imaging and Spectroscopy 11216, 112160G (2020)
- Alexander Ruesch, Jason Yang, Samantha Schmitt, Deepshikha Acharya, Matthew A Smith, Jana M Kainerstorfer, " Estimating intracranial pressure using pulsatile cerebral blood flow measured with diffuse correlation spectroscopy", Biomedical optics express 11 (3), 1462-1476 (2020)
- Jaeah Kim, Alexander Ruesch, Nin Rebecca Kang, Theodore J Huppert, Jana Kainerstorfer, Erik D Thiessen, Anna V Fisher, " A Paradigm for Measuring Resting State Functional Connectivity in Young Children Using fNIRS and Freeplay", bioRxiv, 2020.01. 13.904029 (2020)
2019
- J Cao, TJ Huppert, P Grover, JM Kainerstorfer, " Enhanced spatiotemporal reconstruction of neural activities using simultaneous electroencephalography and near-infrared spectroscopy", JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM 39, 480-481 (2019)
- D Acharya, D Issar, J Yang, A Ruesch, S Schmitt, MA Smith, JM Kainerstorfer, " Effects of intracranial pressure on neurovascular coupling" JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM 39, 50-51 (2019)
- Alexander Ruesch, Jason Yang, Deepshikha Acharya, Samantha Schmitt, Deepa Issar, Matthew A Smith, Jana M Kainerstorfer, " Diffuse correlation spectroscopy for intracranial pressure estimation through cardiac pulse waveform analysis", European Conference on Biomedical Optics, 11074_20 (2019)
- Elliot Collins, Erez Freud, Jana M Kainerstorfer, Jiaming Cao, Marlene Behrmann, " Temporal Dynamics of Shape Processing Differentiate Contributions of Dorsal and Ventral Visual Pathways", Journal of Cognitive Neuroscience 31 (6), 821-836 (2019)
- Jason Yang, Alexander Ruesch, Matthew A Smith, Jana M Kainerstorfer, " Low-cost high temporal resolution diffuse correlation spectroscopy (Conference Presentation)", Optical Tomography and Spectroscopy of Tissue XIII 10874, 1087416 (2019)
- Constance M Robbins, Jason Yang, James F Antaki, Jana M Kainerstorfer, " Hand-held multi-wavelength spatial frequency domain imaging for breast cancer imaging", Optical Tomography and Spectroscopy of Tissue XIII 10874, 94-100 (2019)
- Constance M Robbins, Jason Yang, James F Antaki, Jana M Kainerstorfer, " Hand-held multi-wavelength spatial frequency domain imaging for breast cancer imaging", Optical Tomography and Spectroscopy of Tissue XIII 10874, 94-100 (2019)
- Alexander Ruesch, Jason Yang, Samantha Nelson, Matthew A Smith, Jana M Kainerstorfer, " Frequency dependent hemodynamic response to intracranial pressure changes", Optical Tomography and Spectroscopy of Tissue XIII 10874, 155-163 (2019)
- Ali Afshari, Margaret Keil, Charalampos Lyssikatos, Elena Belyavskaya, Nuria Valdés, Fatima A Chowdhry, Kian Parsa, Yasaman Ardeshirpour, Randall Pursley, Siddharth Khare, Jana M Kainerstorfer, Prashant Chittiboina, Maya B Lodish, Thomas A Mazzuchi, Amir H Gandjbakhche, Constantine A Stratakis, " Optical Imaging Technology: A Useful Tool to Identify Remission in Cushing Disease After Surgery", Hormone and Metabolic Research 51 (02), 120-126 (2019)
- Sergio Fantini, Alexander Ruesch, Jana M Kainerstorfer, " Noninvasive Optical Studies of the Brain: Contributions From Systemic Physiology", Neurophotonics and biomedical spectroscopy, 25-52 (2019)
2018
- Alexander Ruesch, Samantha Schmitt, Jason Yang, Matthew A Smith, Jana M Kainerstorfer, " Intracranial Pressure Changes Derived from Near Infrared Spectroscopy Measurements in Non-Human Primates", Optical Tomography and Spectroscopy, OW4C. 3 (2018)
- Jason Yang, Alexander Ruesch, Samantha Schmitt, Matthew A Smith, Jana M Kainerstorfer, " Correlation of EEG with Intercranial Pressure and Cerebral Hemodynamics during Burst-Supression", Clinical and Translational Biophotonics, JTu3A. 40 (2018)
- Constance M Robbins, Guruprasad Raghavan, Jason Yang, James F Antaki, Jana M Kainerstorfer, " Deep tissue multi-wavelength spatial frequency domain imaging", Optical Tomography and Spectroscopy, JTu3A. 41 (2018)
- Alexander Ruesch, Samantha Schmitt, Matthew A Smith, Jana M Kainerstorfer, " Combined NIRS and DCS measurements of cerebral hemodynamics during intracranial and blood pressure changes (Conference Presentation)", Dynamics and Fluctuations in Biomedical Photonics XV 10493, 104930H (2018)
2017
- Constance M. Robbins, Guruprasad Raghavan, James F. Antaki, Jana M. Kainerstorfer, " Feasibility of spatial frequency-domain imaging for monitoring palpable breast lesions" J. Biomed. Opt. 22(12) 121605 (22 August 2017)
- Yuji Zhang, Jana Kainerstorfer, Jonathan C Knight, Fiorenzo G Omenetto, " Experimental measurement of supercontinuum coherence in highly nonlinear soft-glass photonic crystal fibers" Optics Express 25 (16), 18842-18852 (2017)
- A Ruesch, MA Smith, G Wollstein, IA Sigal, S Nelson, JM Kainerstorfer, " Near-infrared spectroscopy measured vascular reactivity and blood flow autoregulation during intracranial pressure changes", JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM 37, 9-10 (2017)
- Constance M Robbins, James F Antaki, Jana M Kainerstorfer, " Spatial frequency domain imaging for monitoring palpable breast lesions", Optical Tomography and Spectroscopy of Tissue XII 10059, 77-83 (2017)
- A Ruesch, MA Smith, G Wollstein, IA Sigal, S Nelson, JM Kainerstorfer, " Correlation between cerebral hemodynamic and perfusion pressure changes in non-human primates", Optical Tomography and Spectroscopy of Tissue XII 10059, 154-158 (2017)
2015
- JM Kainerstorfer, A Sassaroli, KT Tgavalekos, and S Fantini, " Cerebral Autoregulation in the Microvasculature Measured with Near-Infrared Spectroscopy", Journal of Cerebral Blood Flow and Metabolism, advance online publication February 11, 2015; doi:10.1038/jcbfm.2015.5.
- A Sassaroli, JM Kainerstorfer, and S Fantini, " Study of capillary transit time distribution in coherent hemodynamics spectroscopy&", Journal of Innovative Optical Health Sciences 8(2), 1550025 (2015)
2014
- PG Anderson, JM Kainerstorfer, N Krishnamurthy, MJ Homer, A Sassaroli, RA Graham, and S Fantini, “ Broadband optical mammography: Chromophore concentration and hemoglobin saturation contrast in breast cancer”, PLoS ONE (2014) – in press
- JM Kainerstorfer, A Sassaroli, and S Fantini, “ Coherent hemodynamics spectroscopy in a single step ”, Biomedical Optics Express 5(10), 3403–3416 (2014)
- ML Pierro, JM Kainerstorfer, A Civiletto, DE Weiner, A Sassaroli, B Hallacoglu, and S Fantini, “ Reduced speed of microvascular blood flow in hemodialysis patients versus healthy controls: A coherent hemodynamics spectroscopy study”, Journal of Biomedical Optics 19(2), 26005 (2014) – equal first author
- JM Kainerstorfer, A Sassaroli, ML Pierro, B Hallacoglu, and S Fantini, “ Coherent Hemodynamics Spectroscopy Based on a Paced Breathing Paradigm – Revisited”, Journal of Innovative Optical Health Sciences 7(1), 1450013 (2014)
- JM Kainerstorfer, A Sassaroli, B Hallacoglu, ML Pierro, and S Fantini, “ Practical steps for applying a new dynamic model to near-infrared spectroscopy measurements of hemodynamic oscillations and transient changes: Implications for cerebrovascular and functional brain studies”, Academic Radiology 21, 185-196 (2014)
- M Pierro, B Hallacoglu, A Sassaroli, JM Kainerstorfer, and S Fantini, “ Validation of a novel hemodynamic model for coherent hemodynamics spectroscopy (CHS) and functional brain studies with fNIRS and fMRI”, Neuroimage, 85, 222-233 (2014)
2013
- JM Kainerstorfer, MN Polizzotto, TS Uldrick, R Rahman, M Hassan, L Najafizadeh, Y Ardeshirpour, KM Wyvill, K Aleman, PD Smith, R Yarchoan, AH Gandjbakhche, “ Evaluation of Non-Invasive Multispectral Imaging as a Tool for Measuring the Effect of Systemic Therapy in Kaposi Sarcoma”, PLoS ONE 8(12), e83887 (2013)
- JM Kainerstorfer, Y Yu, G Weliwitigoda, PG Anderson, A Sassaroli, and S Fantini, “ Depth discrimination in diffuse optical transmission imaging by planar scanning off-axis fibers: Initial applications to optical mammography”, PLoS ONE 8(3), e58510 (2013)
2012
- H Tao, JM Kainerstorfer, SM Siebert, EM Pritchard, A Sassaroli, BJ Panilaitis, MA Brenckle, JJ Amsden, J Levitt, S Fantini, DL Kaplan, FG Omenetto, “ Implantable, multifunctional, bioresorbable optics”, PNAS 109(48):19584-9, (2012) – equal first author
- F Amyot, T Zimmermann, J Riley, JM Kainerstorfer, V Chernomordik, E Mooshagian, L Najafizadeh, F Krueger, AH Gandjbakhche, EM Wassermann, “ Normative database of judgment of complexity task with functional near infrared spectroscopy--application for TBI”, Neuroimage, 60(2):879-83 (2012)
- JD Riley, F Amyot, T Pohida, R Pursley, Y Ardeshirpour, JM Kainerstorfer, L Najafizadeh, V Chernomordik, P Smith, J Smirniotopoulos, EM Wassermann, AH Gandjbakhche, “ A hematoma detector-a practical application of instrumental motion as signal in near infra-red imaging”, Biomedical Optics Express., 3(1):192-205 (2012)
- B Dasgeb, JM Kainerstorfer, D Mehregan, AH Gandjbakhche, A Van Vreede, “An Introduction to Skin Imaging Diagnostic Modalities”, International Journal of Dermatology, (2012)
2011
- JM Kainerstorfer, PD Smith, AH Gandjbakhche, “ Non-contact wide-field multi-spectral imaging for tissue characterization”, Journal of Selected Topics in Quantum Electronics, vol PP (99), p. 1 (2011)
- JM Kainerstorfer, JD Riley, M Ehler, L Najafizadeh, F Amyot, M Hassan, R Pursley, SG Demos, V Chernomordik, M Pircher, PD Smith, CK Hitzenberger, and AH Gandjbakhche, “ Quantitative principal component model for skin chromophore mapping using multi spectral images and spatial priors”, Biomedical Optics Express, Vol. 2 Issue 5, pp.1040-1058 (2011)
2010
- AV Medvedev, JM Kainerstorfer, SV Borisov, J VanMeter, ” Functional connectivity in the prefrontal cortex measured by near-infrared spectroscopy during ultra-rapid object recognition”, Journal of Biomedical Optics, 16(1), 016008, (2010)
- AV Medvedev, JM Kainerstorfer, SV Borisov, AH Gandjbakhche, J VanMeter, ““ Seeing” EEG through the skull: imaging prefrontal cortex with fast optical signal”, Journal of Biomedical Optics, 15(6), 061702, (2010)
- JM Kainerstorfer, M Ehler, F Amyot, M Hassan, SG Demos, V Chernomordik, CK Hitzenberger, AH Gandjbakhche and JD Riley, “Principal Component Model of Multi Spectral Data for Near Real Time Skin Chromophore Mapping”, Journal of Biomedical Optics, 15(4), 046007 (2010)
- JM Kainerstorfer, F Amyot, M Ehler, M Hassan, SG Demos, V Chernomordik, CK Hitzenberger, AH Gandjbakhche and JD Riley, “ Direct Curvature Correction for Non-Contact Imaging Modalities – Applied to Multi-Spectral Imaging”, Journal of Biomedical Optics, 15(4), 046013 (2010)
2008
- AV Medvedev, JM Kainerstorfer, SV Borisov, RL Barbour, J VanMeter, “ Event-related fast optical signal in a rapid object recognition task: improving detection by the Independent Component Analysis”, Brain Research, 1236:145-58, (2008)
Book Chapters
- M. Hassan, JM Kainerstorfer, V Chernomordik, A Vogel, I Gannot, R Yarchoan and A Gandjbakhche, “Non-invasive Infrared imaging for functional monitoring of disease processes”, Medical Devices and System, the Biomedical Engineering Handbook, fourth edition, Edited by Nicholas Diakides and Joseph Bronzino. 2011. CRC press, Florida, USA.
Conference Proceedings
- Robbins, Constance M., James F. Antaki, and Jana M. Kainerstorfer. "Spatial frequency domain imaging for monitoring palpable breast lesions." Proc. of SPIE Vol. Vol. 10059. 2017.
- Ruesch, A., et al. "Correlation between cerebral hemodynamic and perfusion pressure changes in non-human primates." SPIE BiOS . International Society for Optics and Photonics, 2017.
- JM Kainerstorfer, A Sassaroli, KT Tgavalekos, and S Fantini, “Dynamic cerebral autoregulation measured with coherent hemodynamics spectroscopy (CHS)”, Proceedings of the SPIE (2015)
- PG Anderson, A Sassaroli, JM Kainerstorfer, N Krishnamurthy, and S Fantini, “Broadband optical mammography: Breast tissue thickness compensation algorithm”, Proceedings of the SPIE (2015)
- A Sassaroli, JM Kainerstorfer, S Fantini “Comparison of linear and nonlinear models for coherent hemodynamics spectroscopy (CHS)”, Proceedings of the SPIE (2015)
- N Krishnamurthy, JM Kainerstorfer, PG Anderson, A Sassaroli, and S Fantini, “Optical mammography instrument for broadband spectral imaging with depth discrimination”, Proceedings of the SPIE (2015)
- AK Saibaba, N Krishnamurthy, PG Anderson, JM Kainerstorfer, A Sassaroli, EL Miller, Sergio Fantini, ME Kilmer, “3D Parameter Reconstruction in Hyperspectral Diffuse Optical Tomography”, Proceedings of the SPIE (2015)
- BF Yuksel, EM Peck, D Afergan, SW Hincks, T Shibata, JM Kainerstorfer, K Tgavalekos, A Sassaroli, S Fantini, and RJK Jacob, “Functional Near-Infrared Spectroscopy for Adaptive Human Computer Interfaces”, Proceedings of the SPIE (2015)
- JM Kainerstorfer, ML Pierro, A Civiletto, B Hallacoglu, DE Weiner, A Sassaroli, and S Fantini, “Coherent Hemodynamics Spectroscopy of the Vulnerable Brain of Hemodialysis Patients: a Cyclic Thigh-Cuff Inflation Protocol”, Proceedings of OSA, (2014)
- A Sassaroli, JM Kainerstorfer, ML Pierro, B Hallacoglu, and S Fantini, “Optical Study of the Cerebral Microcirculation with Coherent Hemodynamics Spectroscopy: a Paced Breathing Protocol”, Proceedings of OSA, (2014)
- PG Anderson, JM Kainerstorfer, N Krishnamurthy, MJ Homer, A Sassaroli, RA Graham, and S Fantini, “Broadband Optical Mammography: Hemoglobin saturation maps for cancerous human breasts”, Proceedings of OSA, (2014)
- JM Kainerstorfer, ML Pierro, B Hallacoglu, A Sassaroli, and S Fantini, “Applications of a novel hemodynamic model to functional brain studies with fNIRS and fMRI”, Proceedings of the SPIE (2013)
- PG Anderson, JM Kainerstorfer, G Weliwitigoda, A Sassaroli, and S Fantini, “Broadband Optical Mammography: Visualization, oximetry, and depth assessment of blood vasculature”, Proceedings of the SPIE (2013)
- M Pierro, A Sassaroli, B Hallacoglu, JM Kainerstorfer, and S Fantini, “Frequency-resolved measurements of hemodynamic oscillations and quantitative analysis with a novel hemodynamic model”, Proceedings of the SPIE (2013)
- JM Kainerstorfer, MN Polizzotto, TS Uldrick, M Hassan, R Rahman, L Najafizadeh, KM Wyvill, K Aleman, PD Smith, R Yarchoan, AH Gandjbakhche, “Multispectral imaging as a potential predictor of treatment efficacy for Kaposi's sarcoma skin lesions”, Proceedings of OSA, (2012)
- JD Riley, F Amyot, T Pohida, R Pursley, Y Ardeshipour, JM Kainerstorfer, L Najafizadeh, V Chernomordik, P Smith, J Smirniotopoulos, EM Wassermann, and AH Gandjbakhche, “Handheld near infra-red imaging device for hemorrhage detection”, Proceedings of OSA, (2012)
- N Karamzadeh, A Medvedev, A Bakhtiar, JM. Kainerstorfer, A Gandjbakhche, and L Najafizadeh, “Capturing Task-Evoked Functional Brain Connectivity Using Combined NIRS/EEG”, Proceedings of OSA, (2012)
- AP Sviridov, V Chernomordik, M Hassan, JM Kainerstorfer, L Najafizadeh, P Smith, AC Boccara, A Gandjbakhche, “Polarization Imaging System for Colposcopy”, Proceedings of OSA, (2012)
- M Ehler, JM Kainerstorfer, D Cunningham, et al., “An extended correction model for optical imaging”, IEEE International Conference on Computational Advances in Bio and Medical Sciences (2011)
- JM Kainerstorfer, F Amyot, M Hassan, M Ehler, R Yarchoan, KM Wyvill, T Uldrick, V Chernomordik, CK Hitzenberger, AH Gandjbakhche, and JD Riley, “Reconstruction-Free Imaging of Kaposi’s Sarcoma Using Multi-Spectral Data”, Proceedings of OSA, (2010)
- AV Medvedev, JM Kainerstorfer, SV Borisov and J VanMeter, ”Fast optical signal in the prefrontal cortex correlates with EEG”, Proceedings IFMBE, (2010)
- JM Kainerstorfer, F Amyot, SG Demos, M Hassan, V Chernomordik, CK Hitzenberger, AH Gandjbakhche, JD Riley, “Quantitative assessment of ischemia and reactive hyperemia of the dermal layers using multi - spectral imaging on the human arm”, Proceedings of the SPIE, Volume 7369, pp. 73690P-73690P-10 (2009)
Editorials
- AH Gandjbakhche, JM Kainerstorfer, B Tromberg, “Special section guest editorial: optical diagnostic and biophotonic methods from bench to bedside”, J Biomed Opt., 17(8), 081401-1 (2012)
- A Gandjbakhche, B Tromberg, JM Kainerstorfer, “Optical diagnostic and biophotonic methods from bench to bedside”, J Biomed Opt., 15(6), 061701 (2010)
