Theoretical and Computational Biological Physics
Part of the Biological Physics Initiative
Carnegie Mellon University, Department of Physics
Resources
This site collects a number of useful resources that are part of the day-to-day research in the Deserno group. Feel free to use them, but please respect any terms and conditions that may apply to them. Some of these resources have been developed in the Deserno group, but not all of them. This page is under construction!
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mbtools tutorial |
If you want to learn how to use the membrane package mbtools and in particular get more familiar with the Cooke model for coarse grained lipid simulations, this is a good way to start. You can download a tutorial we have created about this and used in numerous summer schools. You can get a pdf alone, or a tarball of all necessary scripts to run the exercises: Tutorial pdf file: [2011 version] [2015 version] Tutorial tarball: [2011 version] [2015 version] |
MD Simulation codes |
ESPResSogeneric simulation package, especially suited for situations in which the user needs to supply non-standard routines, potentials, analysis, etc. |
Gromacsone of the standard atomistic simulation packages |
NAMDanother one of the standard atomistic simulation packages |
Visualization |
VMDwell known tool to visualize data from atomistic or coarse-grained simulations |
Packages |
mbtools |
PLUM |
Scripts |
gnu2eps |
block |
Looking for a postdoc, PhD position or under-graduate research project or similar? Have a look at our announcements!
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