Pekkan Cardiovascular Biofluids Group, Biomedical Engineering Deparment, Carnegie Mellon University

Publications

The manuscript copies are provided for educational fair use and patients. Most of the copies are preproduction versions. Please contact the publishers for other inquiries and complete versions.

 

2014

j
Characterization of the vessel geometry, flow mechanics and wall shear stress in the great arteries of wild-type mouse embryo
PlosONE, accepted
Yap CH, Liu X, Pekkan K
j
Left atrial ligation alters intracardiac flow patterns and biomechanical landscape in the chick embryo
pdf
Developmental Dynamics, accepted
Kowalski et. al.
j
Effect of intraluminal thrombus on patient-specific abdominal aortic aneurysm hemodynamics via stereoscopic PIV and CFD modeling
pdf
Journal of Biomechanical Engineering, in press
Chen CY et. al.
j
Outcomes of the ninth international conference on pediatric mechanical circulatory support systems and pediatric cardiopulmonary perfusion
pdf
Artificial Organs 2014; 38 (1)
Ündar A et. al.
j
Experimental and Computational Investigation of the Patient-Specific Abdominal Aortic Aneurysm Pressure Field
pdf
Computer Methods in Biomechanics and Biomedical Engineering, in press
Antón R, et. al

 

2013

j
Aortic Outflow Cannula Tip Design and Orientation impacts Cerebral Perfusion During Pediatric Cardiopulmonary Bypass Procedures
Annals of Biomedical Engineering, in press
Menon et.al.
j
High-speed three-dimensional characterization of fluid flows induced by micro-objects in deep microchannels
pdf
BioChip Journal, in press
Chen and Pekkan
j
Guest Editorial: Special Issue on Fetal Hemodynamics, Developmental Fetal Cardiovascular Biomechanics in the 21st Century
Cardiovascular Engineering and Technology, in press
Pekkan and Keller
j
Critical transitions in early embryonic aortic arch patterning and hemodynamics
pdf
PLOS ONE, 8(3):e60271
Kowalski, Dur, et. al.
j
Patient-specific hemodynamic performance of Fontan conversion templates: Lateral tunnel vs. intra-atrial with fenestration
Cardiology in the Young, in press
Hong, Dur, et. al.
j
Time-resolved OCT-μPIV: A new microscopic PIV technique for noninvasive depth-resolved pulsatile flow profile acquisition
pdf
Experiments in Fluids, 54:1426
Chen, Menon, et. al.
e
Computer modeling for the prediction of thoracic aortic stent graft collapse
pdf
Journal of Vascular Surgery, in press
Pasta, Chod, et. al.
f
Characterization of neonatal aortic cannula jet flow regimes for improved cardiopulmonary bypass
pdf
Journal of Biomechanics, 46(2):362-72
Menon, Teslovich, et. al.
h
Pre-Surgical Evaluation of Fontan Connection Options for Patients with Apicocaval Juxtaposition, using Computational Fluid Dynamics
pdf
Artificial Organs, 37(1):E1-8
Menon, Yoshida, Pekkan
f
Variability of CFD Solutions for Pressure and Flow in a Giant Aneurysm: The SBC2012 CFD Challenge
Journal of Biomechanical Engineering, in press
Steinman, et. al.
j
Novel fenestration designs for controlled venous flow shunting in failing Fontans with systemic
pdf
Artificial Organs, 37(1):66-75
Priti, Menon, et. al.
h
Total cavopulmonary connection for patients with apicocaval juxtaposition: Consideration about the optimal route of conduit using preoperative angiography and flow simulation
pdf
European Journal of Cardiovascular Surgery, in press
Yoshida, et.al.

 

2012

j
Computational hemodynamic optimization predicts dominant aortic arch selection is driven by embryonic outflow tract orientation in the chick embryo
Biomechanics and Modeling in Mechanobiology, 11(7):1057:73
Kowalski, Teslovich, et. al.
j
Visualization of flow structures in Fontan patients using 3-dimensional phase contrast magnetic resonance imaging
Journal of Thoracic and Cardiovascular Surgery, 143(5):1108-16
Sundareswaran, Haggerty, et. al.
Istanbul symposium on neonatal and pediatric cardiopulmonary bypass procedures
pdf
Artificial Organs, 36(5):463-6
Ündar A, Alkan-Bozkaya, et. al.
Mechanotransduction in embryonic vascular development
pdf
Biomechanics and Modeling in Mechanobiology, 11(8):1149-68
Pekkan and Roman
Pulsatile venous waveform quality in Fontan circulation –Clinical implicatons, venous assist options and the future
pdf
The Anatolian Journal of Cardiology, 12(5):420-6
Kocyildirim, Dur, et. al.
Cannulation strategy for aortic arch reconstruction using deep hypothermic circulatory arrest
pdf
Annals of Thoracic Surgery, 94(2):614-20
deZelicourt, Jung, et. al.
j
Pulsatile venous waveform quality affects the conduit performance in functional and ''failing'' Fontan circulations
Cardiology in the Young, 22(3):251-62
Dur, Kocyildirim, et. al.

 

2011

j
Analysis of early embryonic great-vessel microcirculation in Zebrafish using high-speed confocal µPIV
pdf
Biorheology, 48(5):305-21
Chen, Patrick, et. al.
j
Hemodynamics of the hepatic venous three-vessel confluences using particle image velocimetry
Annals of Biomedical Engineering, 39(9):2398-416
Lara, Chen, et. al.
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Cellular level near-wall unsteadiness of high-hematocrit erythrocyte flow using confocal microPIV
Experiments in Fluids, 50(4): 887-904
Patrick, Chen, et.al.
Right ventricular outflow tract reconstruction with bicuspid valved polytetrafluoroethylene conduit
Annals of Thoracic Surgery, 91(4):1235-9
Yoshida, Wearden, et.al.
Interaction between alk1 and blood flow in development of arteriovenous malformations
pdf
Development, 138(8):1573-82
Corti, Young, et.al.
Computer-aided patient-specific coronary artery graft design improvements using CFD coupled shape optimizer
Cardiovascular Engineering and Technology, 2(1): 35-47
Dur, Coskun, et.al.
Pulmonary hepatic flow distribution in total cavopulmonary connections: extracardiac versus intracardiac
pdf
Journal of Thoracic and Cardiovascular Surgery,141(1):207-14
Dasi, Whitehead, et. al.

 

2010

In vitro evaluation of right ventricular outflow tract reconstruction with bicuspid valved polytetrafluoroethylene conduit
Artificial Organs, 34(11):1010-1016
Dur, Yoshida, et.al.
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Optimization of inflow waveform phase-difference for minimized total cavopulmonary power loss
ASME Journal of Biomechanical Engineering, 132(3):031012
Dur, DeGroff, et.al.
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Mechanobiology and the microcirculation: cellular, nuclear and fluid mechanics
Microcirculation, 17(3):179-91
Dahl, Kalinowski, Pekkan
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Three-Dimensional chemical profile manipulation using two-dimensional autonomous microfluidic control
pdf
Journal of the American Chemical Society, 132(4):1339-47
Y. Kim, Pekkan, Messner, LeDuc

 

2009

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Pulsatile in vitro simulation of pediatric univentricular circulation for the evaluation of cardiopulmonary assist scenarios
Artificial Organs, 33(11):967-976
Dur, Lara et.al.
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Aortic arch morphogenesis and flow modeling in the chick embryo
Annals of Biomedical Engineering,37(6):1069-81
Wang, Dur, et.al.
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Hemodynamic performance of stage-2 univentricular reconstruction: Glenn vs. hemi-Fontan templates
Annals of Biomedical Engineering, 37(1):50-63
Pekkan, Dasi, et.al.
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Mitral Web - A new concept for mitral valve repair: improved engineering design and in-vitro studies
Journal of Heart Valve Disease, 18 (3): 300-6
Erek, Padala, et.al.

 

2008

small clip of paper
Patient-specific surgical planning and hemodynamic computational fluid dynamics optimization through free-form haptic anatomy editing tool (SURGEM)
Medical & biological engineering & computing, 46(11):1139-52
Pekkan, Withed, et.al.
Picture of Kerem
The total cavopulmonary connection resistance: A significant impact on single ventricle hemodynamics at rest and exercise
American Journal of Physiology (Heart Circ Physiol), 295(6): H2427-35
Sundareswaran, Pekkan, et.al.
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Modified control grid interpolation for the volumetric reconstruction of fluid flows
Experiments in Fluids, 45(6): 987-97
Frakes, Pekkan, et.al.
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Neonatal aortic arch hemodynamics and perfusion during cardiopulmonary bypass
Journal of Biomechanical Engineering, 130 (6): 120-32
Pekkan, Dur, et.al.
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Functional analysis of Fontan energy dissipation

Journal of Biomechanics, 41 (10): 2246-2252
Dasi, Pekkan, et.al.
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In vitro hemodynamic investigation of the embryonic aortic arch at late gestation

Journal of Biomechanics, 41 (8): 1697-1706
Pekkan, Dasi, et.al.
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Quantitative analysis of extracardiac versus intraatrial Fontan anatomic geometries

Annals of Thoracic Surgery, 85 (3): 810-817
Krishnankutty, Dasi , et.al.
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A new method for registration-based medical image interpolation

IEEE Transactions on Medical Imaging, 27 (3): 370-377
Frakes, Dasi , et.al.

 

2007

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Nonlinear power loss during exercise in single-ventricle patients after the Fontan: insights from computational fluid dynamics
Circulation, 116 (11 Suppl): I165-I171
Whitehead, Pekkan, et.al.
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Progress in the CFD modeling of flow instabilities in anatomical total cavopulmonary connections
pdf, cover
Annals of Biomedical Engineering, 35 (11): 1840-1856
Wang, Pekkan, et.al. (Results featured on the cover illustration)
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Introduction of a new optimized total cavopulmonary connection
Annals of Thoracic Surgery, 83 (6): 2182-2190
Soerensen, Pekkan, et.al.

2006

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Flow study of an extracardiac connection with persistent left superior vena cava
pdf, cover
Journal of Thoracic and Cardiovascular Surgery,131 (4): 785-789
de Zélicourt , Pekkan, et.al. (Results featured on the cover illustration)

 

2005

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Coupling pediatric ventricle assist devices to the Fontan circulation: simulations with a lumped-parameter model
ASAIO Journal, 51 (5): 618-628
Pekkan, Frakes, et.al.
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Total cavopulmonary connection flow with functional left pulmonary artery stenosis: angioplasty and fenestration in vitro
Circulation, 112 (21): 3264-3271
Pekkan, Kitajima, et.al.
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In vitro flow analysis of a patient-specific intraatrial total cavopulmonary connection
Annals of Thoracic Surgery, 79 (6): 2094-2102
de Zélicourt , Pekkan, et.al.
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Single-step stereolithography of complex anatomical models for optical flow measurements
Journal of Biomechanical Engineering, 127 (1): 204-207
de Zélicourt , Pekkan, et.al.
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Physics-driven CFD modeling of complex anatomical cardiovascular flows-a TCPC case study
Annals of Biomedical Engineering, 33 (3): 264-300
Pekkan, de Zélicourt, et.al.
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Three-dimensional velocity field reconstruction
Journal of Biomechanical Engineering, 126 (6): 727-735
Frakes, Smith, et.al.

 

2004

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The effects of different mesh generation methods on computational fluid dynamic analysis and power loss assessment in total cavopulmonary connection
Journal of Biomechanical Engineering, 126 (5): 594-603
Liu, Pekkan, et.al.
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Oscillating Couette flow for in vitro cell loading
Journal of Biomechanics, 37 (6): 939-942
Nalim, Pekkan, et.al.

 

2003

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Two-dimensional flow and NOx emissions in deflagrative internal combustion wave rotor configurations
Journal of Engineering for Gas Turbines and Power,125 (3): 720-733
Pekkan, Nalim

 

1998

Computer aided design and five-axis milling of centrifugal impellers
pdf
Heating Ventilating and Piping Journal (Tesisat Dergisi), 34 (3): 197-204
Pekkan, Eralp (in turkish)