Lee SG, Hur JU, Kim YS. A graph-theoretic modeling on GO space for biological interpretation of gene clusters. Bioinformatics (2004) 20:381-388

Dewey TG, Wu X. Cluster Analysis of Dynamic Parameters of Gene Expression. J. Bioinformatics Comput. Biol. (2003) 1:447-458

Xiang Y, Zhang DW, Zhang JZH. Fully quantum mechanical energy optimization for protein-ligand structure. J Comput. Chem. (2004) 25:1431-1437

Fogel GB, Porto VW, Weekes DG, Fogel DB, Griffey RH, McNeil JA, Lesnik E, Ecker DJ, Sampath R. Discovery of RNA structural elements using evolutionary computation. Nucleic Acids Res. (2002) 30:531-5317

Chung F, Lu L, Dewey T, Galas D. Duplication models for biological networks. J. Comput. Biol. (2003) 10:677-687

Rogic S, Ouellette BFF, Mackworth AK. Improving gene recognition accuracy by combining predictions from two gene-finding programs. Bioinformatics (2002) 18:1034-1045

Kauer G, Blocker H. Analysis of disturbed images. Bioinformatics (2004) 20:1381-1387

Pevzner P, Tesler G. Genome rearrangements in mammalian evolution: Lessons from human and mouse genomes.   Genome Res. (2003) 13:37-45

Faulhammer D, Cukras AR, Lipton RJ, Landweber LF. Molecular computation: RNA solutions to chess problems. Proc. Natl. Acad. Sci. U.S.A. (2000) 97:1385-1389

Chew LP, Huttenlocher DP, Kedem K, Kleinberg J. Fast Detection of Common Geometric Substructure in Proteins. J Comput Biol. (1999) 6:313-25