Summer Research Programs Publications
Stamateris RE, Rafiq K, Ettensohn CA. The expression and distribution of Wnt and Wnt receptor mRNAs during early sea urchin development. Gene Expr Patterns, 10(1):60-4, Jan 2010. Epub 2009 Oct 22.
Murphy, R.F., Velliste, M., and Porreca, G. (2003). Robust Numerical Features for Description and Classification of Subcellular Location Patterns in Fluorescence Microscope Images. J. VLSI Sig. Proc. 35: 311-321.
Puri, S., Telfer, H., Velliste, M., Murphy, R.F., and Linstedt, A.D. (2003). Dispersal of Golgi matrix proteins during mitotic Golgi disassembly. J. Cell Sci. 116, in press.
Csink, A.K., A. Bounoutas, M.L. Griffith, J.F. Sabl, B.T. Sage (2002). Differential gene silencing by trans-heterochromatin in Drosophila melanogaster.Genetics 160: 257-69.
Gupta, S.S., M. Stadler, C.A. Noser, A. Ghosh, B. Steinhoff, D. Lenoir, C.P. Horwitz, K.W. Schramm, and T.J. Collins (2002). Rapid total destruction of chlorophenols by activated hydrogen peroxide. Science 296: 326-328.
Huang, K., J. Lin, J.A. Gajnak, and R.F. Murphy (2002). Image Content-based Retrieval and Automated Interpretation of Fluorescence Microscope Images via the Protein Subcellular Location Image Database. Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging (ISBI 2002), pp. 325-328.
Murphy, R.F., M. Velliste, and G. Porreca (2002). Robust Classification of Subcellular Location Patterns in Fluorescence Microscope Images.Proceedings of the 2002 IEEE International Workshop on Neural Networks for Signal Processing (NNSP 12), pp. 67-76.
Murphy, R.F., M. Velliste, J. Yao, and G. Porreca (2001). Searching Online Journals for Fluorescence Microscope Images Depicting Protein Subcellular Location Patterns. Proceedings of the 2nd IEEE International Symposium on Bio-Informatics and Biomedical Engineering (BIBE 2001), pp. 119-128.
McCallum, S.A., T.K. Hitchens, C. Torborg, and G.S. Rule (2000). Ligand-induced changes in the structure and dynamics of a human class Mu glutathione S-transferase. Biochemistry 39:7343-56.
Markey, M. K., M.V. Boland, and R.F. Murphy (1999). Towards Objective Selection of Representative Microscope Images. Biophys. J. 76: 2230-2237.
Boland, M.V., M.K. Markey, and R.F. Murphy (1998). Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images. Cytometry 33: 366-375.
Horwitz, C.P., D.R. Fooksman, and T.J. Collins (1998). Ligand Design Approach for Securing Robust Oxidation Catalysts. J. Am. Chem. Soc. 120: 4867.
Sreenivas, A., J.L. Patton-Vogt, V. Bruno, P. Griac, and S.A. Henry (1998). A role for phospholipase D (Pld1p) in growth, secretion, and regulation of membrane lipid synthesis in yeast. J. Biol. Chem. 273: 16635-16638.
Tristram-Nagle, S., T. Moore, H. Petrache, and J. Nagle (1998). DMSO produces a new subgel phase in DPPC: DSC and X-ray diffraction study.Biochim. Biophys. Acta 1369: 19-33.
Woolford, C., G. Bounoutas, S. Frew, and E. Jones (1998). Genetic interaction with vps8-200 allows partial suppression of the vestigial vacuole phenotype caused by a pep5 mutation in Saccharomyces cerevisiae. Genetics 148: 85-98.
Boland, M.V. M.K. Markey and R.F. Murphy (1997). Automated Classification of Cellular Protein Localization Patterns Obtained via Fluorescence Microscopy. Proceedings of the 19th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 594-597.
Namba, R., T.M. Pazdera, R. Cerrone, and J.S. Minden (1997). Drosophila embryonic pattern repair: How embryos respond to bicoid mRNA dosage alteration. Development 124: 1393-1403.
Patton-Vogt, J. L., P. Griac, A. Sreenivas, V. Bruno, S. Dowd, M.J. Swede, and S.A. Henry (1997). Role of the yeast phosphatidylinositol/phosphatidylcholine transfer protein (Sec14p) in phosphatidylcholine turnover and INO1 regulation. J. Biol. Chem. 272: 20873-20883.
Pollock, J. A., B. Maneckshana,., and T.E. Leonardo (1997). Three-Dimensional Time-Lapse Digital Movie Analysis Of The Developing Fruit Fly Eye In Organ Culture. Microscopy and Microanalysis 3: 1129-1130.
Taylor, D. L., K. Burton, R.L. DeBiasio, K.A. Giuliano, A.H. Gough, T. Leonardo,, J.A. Pollock, and D.L. Farkas (1997). Automated light microscopy for the study of the brain: cellular and molecular dynamics, development, and tumorigenesis. Ann N Y Acad Sci 820: 208-228.
Webb, G., M. Hoedt,, L. Poole,, and E. Jones (1997). Genetic interactions between a pep7 mutation and the PEP12 and VPS45 genes; evidence for a novel SNARE component in transport between the S. cerevisiae Golgi complex and endosome. Genetics 147: 467-478.
Batterham, P., J.R. Crew, A.M. Sokac, J.R. Andrews, G.M.F. Pasquini, A.G. Davies, R.F. Stocker, and J.A. Pollock (1996). Genetic analysis of the lozenge gene complex in Drosophila melanogaster: adult visual system phenotypes. J. Neurogenet. 10: 193-220.
Mastick G., R. McKay, T. Oligino, K. Donovan,, and J. Lopez (1994). Identification of target genes regulated by homeotic proteins in Drosophila melanogaster through genetic selection of Ultrabithorax protein-binding sites in yeast. Genetics 139: 349-363.
Bachhawat, A.K., M.F. Manolson, D.G. Murdock, J.D. Garman, and E.W. Jones (1993). The VPH2 gene encodes a 25kDa protein required for activity of the yeast vacuolar ATPase. Yeast 9: 175-184.
Brosnan, M.J., S.P. Raman (S. Pattabhiraman), L. Chen, and A.P. Koretsky (1993). Altering creatine kinase enzymes in transgenic mouse muscle by over-expression of the B subunit. Am. J. Physiol. 264: C151-C160.
Lopes, J.M., K.L. Schulze, J.W. Yates, J.P. Hirsch, and S.A. Henry. (1993). The INO1 promoter of Saccharomyces cerevisiae includes an upstream repressor sequence (URS1) common to a diverse set of yeast genes. J. Bacteriol. 175: 4235-4238.
Ripmaster, T., G. Vaughn, and J.L. Woolford Jr. (1993). DRS1 to DRS7, Novel genes required for ribosome assembly and function in Saccharomyces cerevisiae. Mol. Cell. Biol. 13: 7901-7912.
Sun, Z.-Y., H.-T.N. Truong, E.A. Pratt, D.C. Sutherland, C.E. Kulig, R.J. Homer, S.M. Groetsch, P.Y. Hsue, and C. Ho (1993). 19F-NMR Investigation of Membrane-Binding Domain of D-Lactate Dehydrogenase of E. coli. Protein Science 2: 1938-1947.
Woolford, C.A., J.A. Noble, J.D. Garman, M.F. Tam, M.A. Innis and E.W. Jones (1993). Phenotypic analysis of proteinase A mutants: Implications for autoactivation and maturation pathway of the vacuolar hydrolases of Saccharomyces cerevisiae. J. Biol. Chem. 268: 8990-8998.
Henry, S.A., S.D. Kohlwein, J.M. Lopes, M.J. White, T.L. Gill, D.M. Nikoloff, J.A. Ambroziak, K.A. Hudak, M.J. Swede and D. Allen (1992). Biosynthesis of membrane phospholipids in yeast - Genetic and molecular studies. NATO ASI Series, Vol. H63, In Dynamics of Membrane Assembly, (J.A.F. Op den Kamp, ed.) pp. 33-48, Springer-Verlag, Berlin-Heidelberg.
Ripmaster, T., G. Vaughn, and J.L. Woolford Jr. (1992). A putative ATP-Dependent RNA helicase involved in Saccharomyces cerevisiae ribosome assembly. Proc. Natl. Acad. Sci. U.S.A. 89: 11131-11135.
Busch, M.R., J.E. Mace, N.T. Ho, and C. Ho (1991). Roles of b146 histidyl residues in the molecular basis of the Bohr effect of hemoglobin: a Proton nuclear magnetic resonance study. Biochemistry 30: 1865-1877.
Lopes, J.M., J.P. Hirsch, P.A. Chorgo, K.L. Schulze, and S.A. Henry (1991). Analysis of sequences in the INO1 promoter that are involved in its regulation by phospholipid precursors. Nucl. Acids Res. 19: 1687-1693.
Moritz, M., B.A. Pulaski, and J.L. Woolford, Jr. (1991). Assembly of 60S ribosomal subunits is perturbed in temperature-sensitive mutants defective in yeast ribosomal protein L16. Mol. Cell. Biol. 11: 5681-5692.
Preston, R.A., J.D. Garman, L.B. Daniels, and E.W. Jones (1991). Map positions of pet9, pep1, and pdr4 with respect to CEN2. Yeast 7: 857-858.
Truong, H.-T N., E.A. Pratt, G.S. Rule, P.Y. Hsue, and C. Ho (1991). Inactive and temperature-sensitive folding mutants generated by tryptophan substitutions in the membrane-bound D-lactate dehydrogenase of E. coli. Biochemistry 30: 10722-10729.